Our laboratory is focusing on creation of new molecules by directed protein evolution (protein engineering) and artificial molecular assembly (molecular engineering) and its application to new fields.

In this web site, I introduce one of our topics:

Development of a new method to visualize asbestos.

The motivation to start this research was the “asbestos issue” that came to light in Japan 2005. Asbestos is a fibrous mineral that was used for many years in construction materials, but was later found to cause diseases such as mesothelioma and lung cancer. Asbestos diseases were found in not only workers, but also their family members living around asbestos factory; therefore, in 2006, its use was completely prohibited in Japan.

However, by that period, 40 million tons of asbestos had been used in buildings in Japan. The risk of asbestos release still remains when these asbestos-containing buildings are demolished. Therefore, possible release of asbestos fibers must bemonitored when these buildings are demolished. Current regulations require electron microscopy for identification of asbestos.

The use of electron microscopy would increase the cost and duration of asbestos analysis, making asbestos monitoring impractical at demolition sites (I can not believe it!). Thus, a rapid method is needed.


It would be easier to develop the asbestos detection method if we could use an antibody for asbestos. However, since asbestos is an inorganic substance, we could not expect that asbestos possesses the ability to elicit an immune response (generate antibody), and thus instead searched for proteins that bind specifically to asbestos in cellular protein library.
Previously we had discovered a protein that binds to silicon; we, therefore, suspected that some proteins would also bind to asbestos (asbestos is a type of silicon material). So I thought that we can screen for proteins that bind to asbestos specifically.


Since asbestos causes lung disease, we searched for asbestos-binding proteins in lung tissue and found several types of such proteins. We also discovered another asbestos-binding protein from E. coli.

Rapid asbestos visualization by asbestos-binding protein


We next considered how to use the protein-asbestos interaction to make asbestos visible. We used genetic engineering to fuse a protein that binds to asbestos with a fluorescent protein and succeeded in making asbestos visible under fluorescent microscopy. Some asbestos fibers are very thin and could only be detected under electron microscopy. Now we are able to observe these fine asbestos fibers under the conventional fluorescence microscopy by using asbestos-binding fluorescent proteins.

We named this technique “bio-fluorescence method”—a new method for detecting asbestos. This was developed by interdisciplinary research between biochemistry and mineralogy. I think that this kind of research had not previously been performed (none had applied biotechnology to mineral analysis).

It might be world’s first method created by applying biotechnology to mineral analysis.

 
 
In 2010, through an industry–university collaboration, we commercialized an asbestos detection kit based on the results of this research and introduced it to the world market. The kit is very simple to use. When a few drops of a test reagent are applied on a filter containing trapped airborne dust, the fluorescent protein binds with asbestos, which can then be observed under a fluorescence microscope. The entire process is very simple. In February 2014, we collaborated with another company to jointly develop automated fiber recognition software that can detect asbestosfibers inthe fluorescence microscopy images. Using this software, anyone can quickly check for release of asbestos fiber at demolition sites.
Moving forward, we will seek to obtain certification of this method as an “official method” approved by the Ministry of the Environment.

There are many opportunities to innovate by fusing different research fields. I want to create novel biotechnology that will surprise the world.

 

In our research, we consider what types of functions are needed to solve social problems. Primarily we search for proteins / enzymes / microorganisms that could contribute to the solution, and sometimes change their functions by protein engineering and molecular engineering. I think that there are many opportunities to innovate by applying biotechnology to different research fields. One of the outcomes of this type of research is the asbestos binding protein.

We are also currently directing evolution of firefly luminescent enzyme in a test tube to exceed light intensity of wild type enzyme. We can use this enzyme in many applications.

In addition, with the problem of a future food shortage in mind, We are also conducting the research on a new method for selecting for the desired traits in plants. This plant can grow using an unutilized phosphorus resource.

 
I would like to give students the opportunity to experience the same type of excitement and joy of research.

 
My background is in biotechnology. It includes “protein engineering,” which facilitates the evolution of proteins, and “molecular engineering” for artificially reassembling proteins. A major pillar of my research is to use these two technologies to create new functional proteins and enzymes that cannot be replaced by chemical catalyst.

Back to my master’s program in 1986, I was surprised by the research topic that my academic adviser suggested. I realized that I would be the first person in the world focusing on this topic, and I was so excited that I could not sleep that night. Since then, I became completely absorbed in the research and eventually arrived at where I am today.
I would like to give other students the opportunity to experience the same type of excitement and joy of research that I felt by providing them with research topics that have not yet been undertaken by anyone else. Moving forward, I also want to continue to create new technologies and give them back to society.

I have realized that Hiroshima University is truly blessed with an incredible research environment. The university-launched venture company in which I participated has also been a great help in understanding social needs.




Publication:
Asbestos-binding proteins

Other current topics:

Application of a phosphite dehydrogenase gene as a novel dominantselection marker for yeasts
Pt20selection20yeast20JB.pdf

A new subfamily of polyphosphate kinase 2 (class III PPK2) catalyzes both nucleoside monophosphate phosphorylation and nucleoside diphosphate phosphorylation
PPK2-AEM.pdf

The silicon layer supports acid resistance of Bacillus cereus spores
JB20silicon.pdf

Single-step affinity purification of recombinant proteins using the silica-binding Si-tag as a fusion partner
Si-tag20purification.pdf

list of publications

Contact information

mail to: akuroda(at)hiroshima-u.ac.jp
(at) should be replaced with @



Hiroshima University



Department of Molecular Biotechnology