{"id":1194,"date":"2020-02-13T14:36:15","date_gmt":"2020-02-13T05:36:15","guid":{"rendered":"http:\/\/home.hiroshima-u.ac.jp\/~tigawa\/?p=1194"},"modified":"2020-03-23T16:31:51","modified_gmt":"2020-03-23T07:31:51","slug":"bioinfofastq%e3%83%95%e3%82%a1%e3%82%a4%e3%83%ab%e3%82%92%e5%88%86%e5%89%b2%e3%81%99%e3%82%8b","status":"publish","type":"post","link":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/?p=1194","title":{"rendered":"[bioinfo]fastq\u30d5\u30a1\u30a4\u30eb\u3092\u5206\u5272\u3059\u308b"},"content":{"rendered":"<p>fastq\u30d5\u30a1\u30a4\u30eb\u3092\u5206\u5272\u3059\u308b\u306e\u306fseqkit\u3067\u4e0b\u8a18\u306e\u30b3\u30de\u30f3\u30c9\u3067\u884c\u3048\u308b\u304c\u3001<\/p>\n\n\n<pre class=\"wp-block-preformatted\">seqkit split &lt;fastq_file&gt;\n\n<code>  -i, --by-id              split squences according to sequence ID<\/code>\n<code>  -p, --by-part int        split sequences into N parts<\/code>\n<code>  -r, --by-region string   split squences according to subsequence of given region. e.g 1:12 for first 12 bases, -12:-1 for last 12 bases. type \"seqkit split -h\" for more examples<\/code>\n<code>  -s, --by-size int        split sequences into multi parts with N sequences<\/code>\n<code>  -d, --dry-run            dry run, just print message and no files will be created.<\/code>\n<code>  -f, --force              overwrite output directory<\/code>\n<code>  -h, --help               help for split<\/code>\n<code>  -k, --keep-temp          keep tempory FASTA and .fai file when using 2-pass mode<\/code>\n  <code>-O, --out-dir string     output directory (default value is $infile.split)<\/code>\n<code>  -2, --two-pass           two-pass mode read files twice to lower memory usage. (only for FASTA format) <\/code><\/pre>\n\n\n\n<p>\u30d5\u30a1\u30a4\u30eb\u304c\u5927\u304d\u3059\u304e\u308b\u3068RAM\u304c\u8db3\u308a\u305a\u306b\u843d\u3061\u308b\u3002\u305d\u306e\u5834\u5408\u306f\u3001<a href=\"https:\/\/kirill-kryukov.com\/study\/tools\/fastq-splitter\/\">FASTQ Splitter<\/a>\u3092\u7528\u3044\u308b\u3002<\/p>\n\n\n\n<pre class=\"wp-block-preformatted\">Usage: fastq-splitter.pl [options] &lt;file&gt;...\nOptions:\n     --n-parts    - Divide into  parts\n     --part-size  - Divide into parts of size \n     --measure (all|seq|count) - Specify whether all data, sequence length, or\n                            number of sequences is used for determining part\n                            sizes ('all' by default).\n     --eol (dos|mac|unix) - Choose end-of-line character ('unix' by default).\n     --check              - Check FASTQ correctness.\n     --version            - Show version.\n     --help               - Show help.<\/pre>\n","protected":false},"excerpt":{"rendered":"<p>fastq\u30d5\u30a1\u30a4\u30eb\u3092\u5206\u5272\u3059\u308b\u306e\u306fseqk<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"colormag_page_container_layout":"default_layout","colormag_page_sidebar_layout":"default_layout","_locale":"ja","_original_post":"http:\/\/home.hiroshima-u.ac.jp\/~tigawa\/?p=1194","footnotes":""},"categories":[7],"tags":[],"class_list":["post-1194","post","type-post","status-publish","format-standard","hentry","category-protocol","ja"],"_links":{"self":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts\/1194","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=1194"}],"version-history":[{"count":3,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts\/1194\/revisions"}],"predecessor-version":[{"id":1218,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts\/1194\/revisions\/1218"}],"wp:attachment":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=1194"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=1194"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=1194"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}