{"id":1230,"date":"2020-04-01T18:56:07","date_gmt":"2020-04-01T09:56:07","guid":{"rendered":"http:\/\/home.hiroshima-u.ac.jp\/~tigawa\/?p=1230"},"modified":"2023-12-20T15:00:44","modified_gmt":"2023-12-20T06:00:44","slug":"bioinfonanopore%e3%81%ae%e3%83%99%e3%83%bc%e3%82%b9%e3%82%b3%e3%83%bc%e3%83%ab%e3%82%af%e3%82%aa%e3%83%aa%e3%83%86%e3%82%a3%e3%82%92%e6%af%94%e8%bc%83%e3%81%99%e3%82%8b%e3%80%82","status":"publish","type":"post","link":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/?p=1230","title":{"rendered":"[bioinfo]Nanopore\u306e\u30d9\u30fc\u30b9\u30b3\u30fc\u30eb\u30af\u30aa\u30ea\u30c6\u30a3\u3092\u6bd4\u8f03\u3057\u3066\u307f\u305f\u3002"},"content":{"rendered":"<p>\u4ee5\u524d\u306e\u30c7\u30fc\u30bf\u3092\u4f7f\u3063\u3066Nanopore\u306e\u30d9\u30fc\u30b9\u30b3\u30fc\u30e9\u30fc\u3001Guppy\u306e\u30d0\u30fc\u30b8\u30e7\u30f3\u9593\u3067\u306e\u7d50\u679c\u3092\u6bd4\u8f03\u3057\u3066\u307f\u305f\u3002\u3061\u306a\u307f\u306b\u3053\u306e\u30e9\u30f3\u306fMinION\u3067\u306e\u521d\u3081\u3066\u306e\u8a66\u884c\u3067\u3001through put\u304c300Mb\u3057\u304b\u306a\u304b\u3063\u305f\uff08\u305d\u308c\u3067\u3082\u30a2\u30bb\u30f3\u30d6\u30eb\u7d50\u679c\u306b\u306f\u7d76\u5927\u306a\u52b9\u679c\u304c\u3042\u3063\u3066\u9a5a\u3044\u305f\u304c\uff09\u3002<\/p>\n<p>basecall\u3055\u308c\u305ffastq\u3092NanoStat\u3068NanoPlot\u3092\u4f7f\u3063\u3066\u5206\u6790\u3002<\/p>\n\n\n<div class=\"wp-block-columns is-layout-flex wp-container-core-columns-is-layout-28f84493 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\">\n<p>[Guppy CPU v.2.3.5]<\/p>\n\n\n\n<pre class=\"wp-block-preformatted\">General summary:\nMean read length: 1,944.7\nMean read quality: 10.0\nMedian read length: 1,156.0\nMedian read quality: 9.6\nNumber of reads: 159,584.0\nRead length N50: 2,874.0\nTotal bases: 310,335,247.0\nNumber, percentage and megabases of reads above quality cutoffs\nQ5: 158281 (99.2%) 309.9Mb\nQ7: 156088 (97.8%) 308.2Mb\nQ10: 67808 (42.5%) 146.6Mb\nQ12: 26219 (16.4%) 62.7Mb\nQ15: 593 (0.4%) 0.6Mb\nTop 5 highest mean basecall quality scores and their read lengths\n1: 19.8 (215)\n2: 19.5 (209)\n3: 18.4 (252)\n4: 17.9 (291)\n5: 17.8 (257)\nTop 5 longest reads and their mean basecall quality score\n1: 91961 (9.4)\n2: 79794 (8.3)\n3: 76229 (10.2)\n4: 75801 (11.9)\n5: 72135 (9.0)<\/pre>\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"eager\" decoding=\"async\" width=\"604\" height=\"458\" src=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/HistogramReadlength-2.png\" alt=\"\" class=\"wp-image-1236\" srcset=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/HistogramReadlength-2.png 604w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/HistogramReadlength-2-300x227.png 300w\" sizes=\"(max-width: 604px) 100vw, 604px\" \/><\/figure>\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"984\" height=\"982\" src=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_dot.png\" alt=\"\" class=\"wp-image-1237\" srcset=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_dot.png 984w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_dot-300x300.png 300w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_dot-150x150.png 150w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_dot-768x766.png 768w\" sizes=\"auto, (max-width: 984px) 100vw, 984px\" \/><\/figure>\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"984\" height=\"982\" src=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_kde.png\" alt=\"\" class=\"wp-image-1238\" srcset=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_kde.png 984w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_kde-300x300.png 300w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_kde-150x150.png 150w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_kde-768x766.png 768w\" sizes=\"auto, (max-width: 984px) 100vw, 984px\" \/><\/figure>\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"984\" height=\"980\" src=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_loglength_dot.png\" alt=\"\" class=\"wp-image-1239\" srcset=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_loglength_dot.png 984w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_loglength_dot-300x300.png 300w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_loglength_dot-150x150.png 150w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_loglength_dot-768x765.png 768w\" sizes=\"auto, (max-width: 984px) 100vw, 984px\" \/><\/figure>\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"984\" height=\"980\" src=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_loglength_kde-2.png\" alt=\"\" class=\"wp-image-1258\" srcset=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_loglength_kde-2.png 984w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_loglength_kde-2-300x300.png 300w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_loglength_kde-2-150x150.png 150w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_loglength_kde-2-768x765.png 768w\" sizes=\"auto, (max-width: 984px) 100vw, 984px\" \/><\/figure>\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"617\" height=\"458\" src=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LogTransformed_HistogramReadlength.png\" alt=\"\" class=\"wp-image-1241\" srcset=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LogTransformed_HistogramReadlength.png 617w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LogTransformed_HistogramReadlength-300x223.png 300w\" sizes=\"auto, (max-width: 617px) 100vw, 617px\" \/><\/figure>\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"633\" height=\"458\" src=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/Weighted_HistogramReadlength.png\" alt=\"\" class=\"wp-image-1242\" srcset=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/Weighted_HistogramReadlength.png 633w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/Weighted_HistogramReadlength-300x217.png 300w\" sizes=\"auto, (max-width: 633px) 100vw, 633px\" \/><\/figure>\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"646\" height=\"458\" src=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/Weighted_LogTransformed_HistogramReadlength.png\" alt=\"\" class=\"wp-image-1243\" srcset=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/Weighted_LogTransformed_HistogramReadlength.png 646w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/Weighted_LogTransformed_HistogramReadlength-300x213.png 300w\" sizes=\"auto, (max-width: 646px) 100vw, 646px\" \/><\/figure>\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"589\" height=\"458\" src=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/Yield_By_Length.png\" alt=\"\" class=\"wp-image-1244\" srcset=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/Yield_By_Length.png 589w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/Yield_By_Length-300x233.png 300w\" sizes=\"auto, (max-width: 589px) 100vw, 589px\" \/><\/figure>\n<\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\">\n<p>[Guppy GPU v.3.5.1]<\/p>\n\n\n\n<pre class=\"wp-block-preformatted\">General summary:\nMean read length: 1,948.7\nMean read quality: 9.7\nMedian read length: 1,159.0\nMedian read quality: 9.4\nNumber of reads: 159,584.0\nRead length N50: 2,880.0\nTotal bases: 310,976,975.0\nNumber, percentage and megabases of reads above quality cutoffs\nQ5: 157777 (98.9%) 310.4Mb\nQ7: 149137 (93.5%) 305.1Mb\nQ10: 59422 (37.2%) 148.0Mb\nQ12: 22889 (14.3%) 68.8Mb\nQ15: 495 (0.3%) 1.2Mb\nTop 5 highest mean basecall quality scores and their read lengths\n1: 19.2 (252)\n2: 17.4 (240)\n3: 17.2 (2467)\n4: 17.1 (295)\n5: 17.0 (1574)\nTop 5 longest reads and their mean basecall quality score\n1: 91998 (9.5)\n2: 79814 (8.4)\n3: 76201 (10.5)\n4: 75714 (12.2)\n5: 72222 (9.1)<\/pre>\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"604\" height=\"458\" src=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/HistogramReadlength-3.png\" alt=\"\" class=\"wp-image-1247\" srcset=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/HistogramReadlength-3.png 604w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/HistogramReadlength-3-300x227.png 300w\" sizes=\"auto, (max-width: 604px) 100vw, 604px\" \/><\/figure>\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"984\" height=\"982\" src=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_dot-1.png\" alt=\"\" class=\"wp-image-1248\" srcset=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_dot-1.png 984w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_dot-1-300x300.png 300w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_dot-1-150x150.png 150w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_dot-1-768x766.png 768w\" sizes=\"auto, (max-width: 984px) 100vw, 984px\" \/><\/figure>\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"984\" height=\"982\" src=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_kde-1.png\" alt=\"\" class=\"wp-image-1249\" srcset=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_kde-1.png 984w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_kde-1-300x300.png 300w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_kde-1-150x150.png 150w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_kde-1-768x766.png 768w\" sizes=\"auto, (max-width: 984px) 100vw, 984px\" \/><\/figure>\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"984\" height=\"980\" src=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_loglength_dot-1.png\" alt=\"\" class=\"wp-image-1250\" srcset=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_loglength_dot-1.png 984w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_loglength_dot-1-300x300.png 300w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_loglength_dot-1-150x150.png 150w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_loglength_dot-1-768x765.png 768w\" sizes=\"auto, (max-width: 984px) 100vw, 984px\" \/><\/figure>\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"984\" height=\"980\" src=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_loglength_kde-1.png\" alt=\"\" class=\"wp-image-1251\" srcset=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_loglength_kde-1.png 984w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_loglength_kde-1-300x300.png 300w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_loglength_kde-1-150x150.png 150w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LengthvsQualityScatterPlot_loglength_kde-1-768x765.png 768w\" sizes=\"auto, (max-width: 984px) 100vw, 984px\" \/><\/figure>\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"617\" height=\"458\" src=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LogTransformed_HistogramReadlength-1.png\" alt=\"\" class=\"wp-image-1252\" srcset=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LogTransformed_HistogramReadlength-1.png 617w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/LogTransformed_HistogramReadlength-1-300x223.png 300w\" sizes=\"auto, (max-width: 617px) 100vw, 617px\" \/><\/figure>\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"633\" height=\"458\" src=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/Weighted_HistogramReadlength-1.png\" alt=\"\" class=\"wp-image-1253\" srcset=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/Weighted_HistogramReadlength-1.png 633w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/Weighted_HistogramReadlength-1-300x217.png 300w\" sizes=\"auto, (max-width: 633px) 100vw, 633px\" \/><\/figure>\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"646\" height=\"458\" src=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/Weighted_LogTransformed_HistogramReadlength-1.png\" alt=\"\" class=\"wp-image-1254\" srcset=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/Weighted_LogTransformed_HistogramReadlength-1.png 646w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/Weighted_LogTransformed_HistogramReadlength-1-300x213.png 300w\" sizes=\"auto, (max-width: 646px) 100vw, 646px\" \/><\/figure>\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"589\" height=\"458\" src=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/Yield_By_Length-1.png\" alt=\"\" class=\"wp-image-1255\" srcset=\"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/Yield_By_Length-1.png 589w, https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/wp-content\/uploads\/2020\/04\/Yield_By_Length-1-300x233.png 300w\" sizes=\"auto, (max-width: 589px) 100vw, 589px\" \/><\/figure>\n<\/div>\n<\/div>\n\n\n\n<p>\u6570\u5b57\u3060\u3051\u898b\u308b\u3068\u5927\u3057\u3066\u5909\u5316\u304c\u5185\u5bb9\u306b\u898b\u3048\u308b\u304c\u3001\u65b0\u3057\u3044\u30d0\u30fc\u30b8\u30e7\u30f3\u306eguppy\u306e\u65b9\u304c\u77ed\u3044\u30ea\u30fc\u30c9\u306e\u30b3\u30fc\u30eb\u3092\u843d\u3068\u3055\u305a\u306b\u30b3\u30fc\u30eb\u3057\u3066\u304f\u308c\u3066\u3044\u308b\u3088\u3046\u3067\u3042\u308b\u3002<br>\u3061\u306a\u307f\u306bv3.5.1\u306eguppy\u306fGPU(nvidia Quadro P4000)\u3092\u4f7f\u3063\u305f\u304cCPU\u7248\u3068\u6bd4\u3079\u308b\u3068\u304b\u306a\u308a\u9ad8\u901f\u3067\u30b3\u30fc\u30eb\u3057\u3066\u304f\u308c\u308b\u3002SSD\u306b\u52a0\u3048\u3066GPU\u3082\u5fc5\u9808\u3067\u3042\u308b\u3002nanopore\u306e\u7d0d\u671f\u3084\u6ce8\u6587\u65b9\u6cd5\u306b\u306f\u56f0\u3063\u305f\u3082\u306e\u3060\u304c\u3001\u958b\u767a\u8005\u3068\u306f\u99ac\u304c\u5408\u3044\u305d\u3046\u3060\u3068\u611f\u3058\u308b\u3002<\/p>\n","protected":false},"excerpt":{"rendered":"<p>\u4ee5\u524d\u306e\u30c7\u30fc\u30bf\u3092\u4f7f\u3063\u3066Nanopore\u306e\u30d9<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"colormag_page_container_layout":"default_layout","colormag_page_sidebar_layout":"default_layout","_locale":"ja","_original_post":"http:\/\/home.hiroshima-u.ac.jp\/~tigawa\/?p=1230","footnotes":""},"categories":[7],"tags":[],"class_list":["post-1230","post","type-post","status-publish","format-standard","hentry","category-protocol","ja"],"_links":{"self":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts\/1230","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=1230"}],"version-history":[{"count":11,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts\/1230\/revisions"}],"predecessor-version":[{"id":1697,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts\/1230\/revisions\/1697"}],"wp:attachment":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=1230"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=1230"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=1230"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}