{"id":1490,"date":"2021-04-04T15:35:18","date_gmt":"2021-04-04T06:35:18","guid":{"rendered":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/?p=1490"},"modified":"2021-04-08T09:40:43","modified_gmt":"2021-04-08T00:40:43","slug":"bioinfohic-pro%e3%81%ae%e3%82%a4%e3%83%b3%e3%82%b9%e3%83%88%e3%83%bc%e3%83%ab%e3%81%a8%e5%ae%9f%e8%a1%8c","status":"publish","type":"post","link":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/?p=1490","title":{"rendered":"[bioinfo]HiC-Pro\u306e\u30a4\u30f3\u30b9\u30c8\u30fc\u30eb\u3068\u5b9f\u884c"},"content":{"rendered":"\n<p style=\"font-size:15px\">HiC\u30c7\u30fc\u30bf\u306e\u89e3\u6790\u30c4\u30fc\u30ebHiC-Pro\u3092\u30a4\u30f3\u30b9\u30c8\u30fc\u30eb\u3059\u308b\u3002<br>\u57fa\u672c\u7684\u306b\u306fhttps:\/\/github.com\/nservant\/HiC-Pro\u3092\u53c2\u7167\u3059\u308b\u3002<\/p>\n\n\n\n<p style=\"font-size:15px\">git\u304b\u3089\u30bd\u30fc\u30b9\u3092\u30c0\u30a6\u30f3\u30ed\u30fc\u30c9<\/p>\n\n\n\n<pre class=\"wp-block-preformatted\" style=\"font-size:15px\">git clone https:\/\/github.com\/nservant\/HiC-Pro<\/pre>\n\n\n\n<p style=\"font-size:15px\">yml\u30d5\u30a1\u30a4\u30eb\u304c\u3042\u308b\u306e\u3067\u3001conda\u306e\u65b0\u898f\u74b0\u5883\u3092\u5c0e\u5165\u3059\u308b\u3002<\/p>\n\n\n\n<pre class=\"wp-block-preformatted\" style=\"font-size:15px\"><code>conda env create -f MY_INSTALL_PATH\/HiC-Pro\/environment.yml -p WHERE_TO_INSTALL_MY_ENV<\/code>\n<code>conda activate WHERE_TO_INSTALL_MY_ENV<\/code><\/pre>\n\n\n\n<p style=\"font-size:15px\">\u305d\u306e\u5f8c\u3001\u672c\u4f53\u306eHiC-Pro\u3092\u30bd\u30fc\u30b9\u304b\u3089\u30b3\u30f3\u30d1\u30a4\u30eb<\/p>\n\n\n\n<pre class=\"wp-block-preformatted\" style=\"font-size:15px\">make configure\nmake install\nsudo make install<\/pre>\n\n\n\n<p style=\"font-size:15px\">\u5b9f\u884c\u30d5\u30a1\u30a4\u30eb\u306f\u30c7\u30d5\u30a9\u30eb\u30c8\u3067\u306f\/usr\/local\/bin\/HiC-Pro_3.0.0\/bin\/\u306b\u4f5c\u6210\u3055\u308c\u308b\u306e\u3067\u3001\u30d1\u30b9\u3092\u901a\u3059\u304b\u76f4\u63a5\u5165\u529b\u3057\u3066\u5b9f\u884c\u3002<\/p>\n\n\n\n<pre class=\"wp-block-preformatted\" style=\"font-size:15px\">\/usr\/local\/bin\/HiC-Pro_3.0.0\/bin\/HiC-Pro<\/pre>\n\n\n\n<p style=\"font-size:15px\">HiC-Pro\u306e\u30c7\u30fc\u30bf\u30bb\u30c3\u30c8\u306fdata\/SRR########\/SRR########_1.fq.gz, SRR########_2.fq.gz\u3068\u3044\u3046\u611f\u3058\u306e\u968e\u5c64\u7684\u306a\u30d5\u30a9\u30eb\u30c0\u69cb\u9020\u3092\u5fc5\u8981\u3068\u3059\u308b\u306e\u3067\u3001\u7d20\u76f4\u306b\u5f93\u3063\u3066\u30c7\u30fc\u30bf\u30bb\u30c3\u30c8\u3054\u3068\u306b\u30d5\u30a9\u30eb\u30c0\u306b\u307e\u3068\u3081\u3066\u5165\u308c\u308b\u3002<\/p>\n\n\n\n<p style=\"font-size:15px\">\u8ffd\u8a18\uff082021\/04\/08\uff09<br>\u5b9f\u969b\u306bHiC-Pro v3.0.0\u3092\u30e9\u30f3\u3057\u305f\u3068\u3053\u308d\u3001\u6b63\u5e38\u306b\u7d42\u4e86\u3059\u308b\u3082\u306e\u306e\u3001iced matrix\u306e\u5024\u304c\u7570\u72b6\u3067\u3001\u7d9a\u304fHiTC\u306e\u89e3\u6790\u304c\u6c38\u9060\u306b\u7d42\u308f\u3089\u306a\u3044\u3068\u3044\u3046\u30d0\u30b0\u306b\u76f4\u9762\u3057\u305f\u3002\u3053\u308c\u306ficed v0.57\u306b\u7531\u6765\u3059\u308b\u30d0\u30b0\u3067\u3001iced v0.58\u306b\u30a2\u30c3\u30d7\u30c7\u30fc\u30c8\u3059\u308b\u3053\u3068\u3067\u89e3\u6c7a\u3059\u308b\uff08\u30c8\u30e9\u30d6\u30eb\u30b7\u30e5\u30fc\u30c8\u306b2\u65e5\u3092\u8cbb\u3084\u3057\u305f&#8230;\uff09\u3002github\u306b\u3066\u5831\u544a\u6e08\u307f\uff08<a href=\"https:\/\/github.com\/nservant\/HiC-Pro\/issues\/428\" data-type=\"internal\">#428<\/a>\uff09\u3002\u3053\u306e\u6307\u6458\u306b\u3088\u3063\u3066HiC-Pro\u306fv3.1.0\u306b\u30d0\u30fc\u30b8\u30e7\u30f3\u30a2\u30c3\u30d7\u3055\u308c\u305f\u3002<\/p>\n","protected":false},"excerpt":{"rendered":"<p>HiC\u30c7\u30fc\u30bf\u306e\u89e3\u6790\u30c4\u30fc\u30ebHiC-Pro\u3092<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"colormag_page_container_layout":"default_layout","colormag_page_sidebar_layout":"default_layout","_locale":"ja","_original_post":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/?p=1490","footnotes":""},"categories":[7],"tags":[],"class_list":["post-1490","post","type-post","status-publish","format-standard","hentry","category-protocol","ja"],"_links":{"self":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts\/1490","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=1490"}],"version-history":[{"count":4,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts\/1490\/revisions"}],"predecessor-version":[{"id":1508,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts\/1490\/revisions\/1508"}],"wp:attachment":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=1490"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=1490"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=1490"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}