{"id":1646,"date":"2021-09-21T18:56:55","date_gmt":"2021-09-21T09:56:55","guid":{"rendered":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/?p=1646"},"modified":"2021-09-21T18:57:00","modified_gmt":"2021-09-21T09:57:00","slug":"bioinfoont-guppy%e3%81%a7%e8%a4%87%e6%95%b0%e3%83%95%e3%82%a9%e3%83%ab%e3%83%80%e3%81%ab%e6%b8%a1%e3%82%8bfast5%e3%83%87%e3%83%bc%e3%82%bf%e3%82%92%e4%b8%80%e5%ba%a6%e3%81%ab%e3%82%b3%e3%83%bc","status":"publish","type":"post","link":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/?p=1646","title":{"rendered":"[bioinfo]ONT Guppy\u3067\u8907\u6570\u30d5\u30a9\u30eb\u30c0\u306b\u6e21\u308bfast5\u30c7\u30fc\u30bf\u3092\u4e00\u5ea6\u306b\u30b3\u30fc\u30eb\u3059\u308b"},"content":{"rendered":"\n<p>\u30d5\u30ed\u30fc\u30bb\u30eb\u306e\u30d0\u30fc\u30b8\u30e7\u30f3\u306b\u3088\u3063\u3066guppy\u306e\u8a2d\u5b9a\u3092\u5909\u3048\u308b\u5fc5\u8981\u304c\u3042\u308b\u305f\u3081\u3001v9.4.1\u3068v10.3\u306e\u30d5\u30ed\u30fc\u30bb\u30eb\u3067\u8aad\u3093\u3060\u30c7\u30fc\u30bf\u306f\u300cFLO-MIN106\u300d\u300cFLO-MIN111\u300d\u300cFLO-PRO002\u300d\u306a\u3069\u5225\u3005\u306e\u30d5\u30a9\u30eb\u30c0\u306b\u307e\u3068\u3081\u3066\u304a\u304f\u3002<\/p>\n\n\n\n<pre class=\"wp-block-preformatted\">dir=$(ls -d *\/fast5_*) #\u30a4\u30f3\u30d7\u30c3\u30c8\u30d5\u30a9\u30eb\u30c0\u3092\u5909\u6570dir\u306b\u8aad\u307f\u8fbc\u307f\nfor var in $dir\n do\n \/opt\/ont\/guppy\/bin\/guppy_basecaller -i $var -s guppy_out_sup -m \/opt\/ont\/guppy\/data\/template_r9.4.1_450bps_sup.jsn -x CUDA:0 --chunks_per_runner 448\n done<\/pre>\n\n\n\n<p><\/p>\n\n\n\n<p><\/p>\n\n\n","protected":false},"excerpt":{"rendered":"<p>\u30d5\u30ed\u30fc\u30bb\u30eb\u306e\u30d0\u30fc\u30b8\u30e7\u30f3\u306b\u3088\u3063\u3066guppy<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"colormag_page_container_layout":"default_layout","colormag_page_sidebar_layout":"default_layout","_locale":"ja","_original_post":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/?p=1646","footnotes":""},"categories":[7],"tags":[],"class_list":["post-1646","post","type-post","status-publish","format-standard","hentry","category-protocol","ja"],"_links":{"self":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts\/1646","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=1646"}],"version-history":[{"count":2,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts\/1646\/revisions"}],"predecessor-version":[{"id":1648,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts\/1646\/revisions\/1648"}],"wp:attachment":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=1646"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=1646"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=1646"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}