{"id":2284,"date":"2023-06-01T12:33:28","date_gmt":"2023-06-01T03:33:28","guid":{"rendered":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/?p=2284"},"modified":"2025-09-25T11:21:47","modified_gmt":"2025-09-25T02:21:47","slug":"%e8%a8%88%e7%ae%97%e6%a9%9f%e3%81%ae%e8%a6%9a%e6%9b%b8","status":"publish","type":"post","link":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/?p=2284","title":{"rendered":"\u8a08\u7b97\u6a5f\u306e\u899a\u66f8"},"content":{"rendered":"\n

Alphafold\u7528\u8a08\u7b97\u6a5f<\/p>\n\n\n\n

Parts<\/strong><\/th>Company<\/strong><\/th>Product<\/strong><\/th>Installation date<\/strong><\/th>Miscellanies<\/strong><\/th>Wattage<\/strong><\/th><\/tr><\/thead>
CPU<\/td>Intel<\/td>Core i7-9800X<\/td>2019\/05<\/td>@3.8GHz x 16<\/td>165W<\/td><\/tr>
RAM<\/td>Kingston<\/td>KSM26RD4\/32HAI x 4<\/td>2019\/05<\/td>DDR4 2066 (PC4-20800) 32Gb x 4 (128GB)<\/td>28W<\/td><\/tr>
GPU<\/s><\/td>\u7384\u4eba\u5fd7\u5411<\/s><\/td>GG-RTX3060-E12GB\/OC\/DF<\/s><\/td>2021\/07<\/s>\u6545\u969c(2024\/01)<\/td>GeForce RTX3060 \/ DDR6 12GB<\/s><\/td>170W<\/s><\/td><\/tr>
GPU<\/s><\/td>GAINWARD<\/s><\/td>NE63060019K9-190AU-G VD7555<\/s><\/td>2023\/06<\/s><\/td>GeForce RTX3060 \/ DDR6 12GB<\/s><\/td>170W<\/s><\/td><\/tr>
GPU<\/td>\u7384\u4eba\u5fd7\u5411<\/td>GG-RTX4090-E24GB\/OC\/TP<\/td>2023\/05<\/td>GeForce RTX4090 \/ DDR6X 24GB<\/td>450W<\/td><\/tr>
Motherboard<\/td>ASRock<\/td>X299 Extreme4<\/td>2019\/05<\/td><\/td>6W<\/td><\/tr>
Power supply<\/s><\/td>Thermaltake<\/s><\/td>Smart 500W
(PS624 PS-SPD-0500NPCWJP-W)<\/s><\/td>		2019\/05<\/s><\/td>500W 80PLUS STANDARD<\/s><\/td><\/td><\/tr>
Power supply<\/td>Thermaltake<\/td>TOUGHPOWER GF1 1200W
(PS-TPD-1200FNFAGJ-1 PS1061)<\/td>		2023\/06<\/td>1200W 80PLUS GOLD<\/td><\/td><\/tr>
NVMe0<\/td>Western Digital<\/td>WD Blue SN550
(WDS100T2B0C-EC)<\/td>		2021\/09<\/td>1TB NVMe (2,400MB\/s)<\/td>25W<\/td><\/tr>
NVMe1<\/s><\/td>Western Digital<\/s><\/td>WD Green SN350
(WDS200T3G0C-EC)<\/s><\/td>		2022\/07<\/s><\/td>2TB NVMe (3,200MB\/s)<\/s><\/td>25W<\/s><\/td><\/tr>
NVMe1<\/td>Hanye<\/td>HE70 PCIe NVMe M.2 2280
(\u200eHE70-4TBNHS1)<\/td>		2023\/08<\/td>4TB NVMe (7450MB\/s)<\/td>25W<\/td><\/tr>
HDD0<\/td>Western Digital<\/td>WD40EZRZ-22GXCB0<\/td>2019\/05<\/td>4TB<\/td>16W<\/td><\/tr>
HDD1<\/td>TOSHIBA<\/td>MN07ACA12T<\/td>2021\/05<\/td>12TB<\/td>16W<\/td><\/tr>
HDD2<\/td>Western Digital<\/td>WD40EZRZ-22GXCB0<\/td>2019\/05<\/td>4TB<\/td>16W<\/td><\/tr>
HDD3<\/td>Western Digital<\/td>WD60EZAZ-00SF3B0<\/td>2020\/12<\/td>6TB<\/td>16W<\/td><\/tr><\/tbody>
<\/td><\/td><\/td><\/td>Total<\/td>855W<\/td><\/tr><\/tfoot><\/table>
\u5143\u3005\u3001\u914d\u5217\u30c7\u30fc\u30bf\u89e3\u6790\u7528\u306b\u8cfc\u5165\u3002Alphafold2\u89e3\u6790\u7528\u306bGPU\u3092\u5c0e\u5165\u3057\u3066\u304b\u3089SSD\u3001NVMe\u3092\u5897\u8a2d\u3002
\u9ad8\u901f4TB NVMe\u3092\u5c0e\u5165\u3057\u30ea\u30d5\u30a1\u30ec\u30f3\u30b9\u30c7\u30fc\u30bf\u3092\u3059\u3079\u3066\u683c\u7d0d\uff082023\/08\uff09
Promethion\u7528\u30de\u30b7\u30f3\u306f\u5225\u9014\u7528\u610f\u3057\u305f\u305f\u3081RTX4090\u304c\u4e0d\u8981\u3068\u306a\u3063\u305f\u305f\u3081\u3001\u6545\u969c\u3057\u305fRTX306\u3068\u5165\u308c\u66ff\u3048\u3002\u6545\u969c\u3057\u305fRTX3060\u306f3\u5e74\u4fdd\u8a3c\u671f\u9593\u4e2d\u3060\u3063\u305f\u305f\u3081\u4ea4\u63db\uff082024\/02\uff09<\/figcaption><\/figure>\n\n\n\n

Alphafold\u7528\u8a08\u7b97\u6a5f2\uff08calc2\uff09<\/p>\n\n\n\n

Parts<\/strong><\/th>Company<\/strong><\/th>Product<\/strong><\/th>Installation date<\/strong><\/th>Miscellanies<\/strong><\/th>Wattage<\/strong><\/th><\/tr><\/thead>
CPU<\/td>AMD<\/td>Ryzen 7 7700X<\/td>2023\/08<\/td>@4.5GHz x 16
CPU\u30d5\u30a1\u30f3\uff08Thermalright Assassin King 120 SE\uff09\u304c\u6545\u969c\u3057\u3066\u3046\u306a\u308a\u3092\u3042\u3052\u308b\u3088\u3046\u306b\u306a\u3063\u305f\u306e\u3067\u300112cm\u30d5\u30a1\u30f3\u3092\u307b\u307c\u540c\u7b49\u306eThermalright TL-C12 CPU\u30d5\u30a1\u30f3\u306b\u4ea4\u63db\uff082024\/04\uff09<\/td>		105W<\/td><\/tr>
RAM<\/td>CFD<\/td>CFD Standard W5U5600CS-32G<\/td>2023\/08<\/td>DDR5 5600 (PC5-33600) 32Gb x 2 (64GB)<\/td>28W<\/td><\/tr>
GPU<\/td>GAINWARD<\/td>NE63060019K9-190AU-G VD7555<\/td>2023\/06<\/td>GeForce RTX3060 \/ DDR6 12GB<\/td>170W<\/td><\/tr>
Motherboard<\/td>MSI<\/td>PRO A620M-E<\/td>2023\/08<\/td>A620 chipset for AMD<\/td>6W<\/td><\/tr>
Power supply<\/s><\/td>Thermaltake<\/s><\/td>Smart 500W
(PS624 PS-SPD-0500NPCWJP-W)<\/s><\/td>		2019\/05<\/s><\/td>500W 80PLUS STANDARD<\/s><\/td><\/td><\/tr>
Power supply<\/td>NA<\/td>NA<\/td>~2012?<\/td>500W 80PLUS GOLD<\/td><\/td><\/tr>
NVMe1<\/td>Hanye<\/td>HE70 PCIe NVMe M.2 2280
(\u200eHE70-4TBNHS1)<\/td>		2023\/08<\/td>4TB NVMe (7450MB\/s)<\/td>25W<\/td><\/tr><\/tbody>
<\/td><\/td><\/td><\/td>Total<\/td>334W<\/td><\/tr><\/tfoot><\/table><\/figure>\n\n\n\n
\n\n\n\n

Nanopore\u7528\u8a08\u7b97\u6a5f<\/p>\n\n\n\n

Parts<\/strong><\/th>Company<\/strong><\/th>Product<\/strong><\/th>Installation date<\/strong><\/th>Miscellanies<\/strong><\/th>Wattage<\/strong><\/th><\/tr><\/thead>
CPU<\/td>Intel<\/td>Core i7-12700KF<\/td>2023\/05<\/td>@3.6GHz x 20<\/td>125W<\/td><\/tr>
RAM<\/td>Patriot Memory<\/td>PVE2432G400C0K<\/td>2023\/05<\/td>DDR4 4000 (PC4-32000) 16Gb x 4 (64GB)<\/td>28W<\/td><\/tr>
GPU<\/s><\/td>\u7384\u4eba\u5fd7\u5411<\/s><\/td>GG-RTX4090-E24GB\/OC\/TP<\/s><\/td>2023\/05<\/s><\/td>GeForce RTX4090 \/ DDR6X 24GB<\/s><\/td>450W<\/s><\/td><\/tr>
GPU<\/td>\u7384\u4eba\u5fd7\u5411<\/td>GG-RTX3060-E12GB\/OC\/DF<\/td>2024\/01<\/td>GeForce RTX3060 \/ DDR6 12GB<\/td>170W<\/td><\/tr>
Motherboard<\/td>ASRock<\/td>B660M Phantom<\/td>2023\/05<\/td><\/td>6W<\/td><\/tr>
Power supply<\/td>owltech<\/td>OEC-PSUCP1200<\/td>2023\/05<\/td>1200W 80PLUS PLATINUM<\/td><\/td><\/tr>
SSD<\/td>SUNEAST<\/td>SE90025ST-02TB<\/td>2023\/05<\/td>2TB SSD (550MB\/s)<\/td>25W<\/td><\/tr>
NVMe0<\/td>Hynye<\/td>HE70-2TBNHS1<\/td>2023\/05<\/td>2TB NVMe (7,450MB\/s)<\/td>25W<\/td><\/tr><\/tbody>
<\/td><\/td><\/td><\/td>Total<\/td>659W<\/td><\/tr><\/tfoot><\/table>
Nanopore basecaller\u7528\u306bRTX4090\u3092\u5b9f\u88c5\u3002\u4fa1\u683c\u306e\u534a\u5206\u4ee5\u4e0a\u304cRTX4090\u306e\u30b3\u30b9\u30c8\u3002<\/s>Flongle\u5c02\u7528\u6a5f\u3068\u3057\u3066RTX3060\u306b\u63db\u88c5<\/figcaption><\/figure>\n\n\n\n
\n\n\n\n

Geneious\u7528PC<\/p>\n\n\n\n

Parts<\/strong><\/th>Company<\/strong><\/th>Product<\/strong><\/th>Installation date<\/strong><\/th>Miscellanies<\/strong><\/th>Wattage<\/strong><\/th><\/tr><\/thead>
CPU<\/td>Intel<\/td>Core i7-4790<\/td>–<\/td>@3.6GHz x 8<\/td>84W<\/td><\/tr>
RAM<\/td>–<\/td>–<\/td>–<\/td>16GB<\/td>7W<\/td><\/tr>
Motherboard<\/td>ASUS<\/td>H81M-E<\/td>–<\/td><\/td>6W<\/td><\/tr>
Power supply<\/td>–<\/td>–<\/td>–<\/td>–<\/td><\/td><\/tr>
HDD0<\/td>TOSHIBA<\/td>DT01ACA100<\/td>–<\/td>1TB<\/td>16W<\/td><\/tr>
HDD1<\/td>Western Digital<\/td>WD40EZRZ-22GXCB0<\/td>–<\/td>4TB<\/td>16W<\/td><\/tr><\/tbody>
<\/td><\/td><\/td><\/td>Total<\/td>129W<\/td><\/tr><\/tfoot><\/table>
Geneious\u306e\u30d0\u30fc\u30b8\u30e7\u30f3\u5236\u9650\u306b\u3088\u308aUbuntu 16.04LTS\u306e\u307e\u307e\u904b\u7528\u3002<\/figcaption><\/figure>\n\n\n\n

\u52d5\u753b\u89e3\u6790\u7528\u8a08\u7b97\u6a5f2\uff08calc3\uff09<\/p>\n\n\n\n

Parts<\/strong><\/th>Company<\/strong><\/th>Product<\/strong><\/th>Installation date<\/strong><\/th>Miscellanies<\/strong><\/th>Wattage<\/strong><\/th><\/tr><\/thead>
CPU<\/td>AMD<\/td>Ryzen 7 7700X<\/td>2023\/11<\/td>@4.5GHz x 16<\/td>105W<\/td><\/tr>
RAM<\/td>CORSAIR<\/td>Vengeance \u200eCMK96GX5M2B5600C40<\/td>2023\/11<\/td>DDR5 5600 (PC5-33600) 48Gb x 2 (96GB)<\/td>28W<\/td><\/tr>
GPU<\/s><\/td>ELSA<\/s><\/td>EQP2200-5GER<\/s><\/td>2021\/06<\/s><\/td>NVIDIA Quadro P2200  \/ DDR5X 5GB<\/s><\/td>75W<\/s><\/td><\/tr>
GPU<\/td>\u7384\u4eba\u5fd7\u5411<\/td>GG-RTX3060-E12GB\/OC\/DF\uff08\u4fdd\u8a3c\u4ea4\u63db\u54c1\uff09<\/td>2024\/01<\/td>GeForce RTX3060 \/ DDR6 12GB<\/td>170W<\/td><\/tr>
Motherboard<\/td>MSI<\/td>PRO B650P WIFI<\/td>2023\/11<\/td>B650 chipset for AMD<\/td>6W<\/td><\/tr>
Power supply<\/td>Thermaltake<\/td>Smart 500W
(PS624 PS-SPD-0500NPCWJP-W)<\/td>		2019\/05<\/td>500W 80PLUS STANDARD<\/td><\/td><\/tr>
NVMe1<\/td>Western Digital<\/td>WD Green SN350
(WDS200T3G0C-EC)<\/td>		2022\/07<\/td>2TB NVMe (3,200MB\/s)<\/td>25W<\/td><\/tr><\/tbody>
<\/td><\/td><\/td><\/td>Total<\/td>239W<\/td><\/tr><\/tfoot><\/table>
\u52d5\u753b\u306e\u89e3\u6790\u304c\u5fc5\u8981\u3068\u306a\u308a\u3001\u3044\u308d\u3044\u308d\u518d\u5229\u7528\u3057\u3066\u4f5c\u6210\u3002<\/figcaption><\/figure>\n\n\n\n

Nanopore basecall\u7528\u30b5\u30fc\u30d0\u30fc<\/p>\n\n\n\n

Parts<\/strong><\/th>Company<\/strong><\/th>Product<\/strong><\/th>Installation date<\/strong><\/th>Miscellanies<\/strong><\/th>Wattage<\/strong><\/th><\/tr><\/thead>
CPU<\/td>AMD<\/td>AMD Ryzen Threadripper 7960X<\/td>2024\/11<\/td>@4.2GHz x 48 threads<\/td>350W<\/td><\/tr>
RAM<\/td>CORSAIR<\/td>CWS DDR5 CMA64GX5M4B6400C32<\/td>2024\/11<\/td>DDR5 6400 (PC5-51200) (registered) 16Gb x 4 (64GB)<\/td>28W<\/td><\/tr>
GPU<\/td>Palit<\/td>NED47TSH19T2-1043A<\/td>2024\/07<\/td>GeForce RTX 4070 Ti SUPER GamingPro OC 16GB<\/td>285W<\/td><\/tr>
GPU<\/td>Palit<\/td>NED47TSH19T2-1043A<\/td>2024\/07<\/td>GeForce RTX 4070 Ti SUPER GamingPro OC 16GB<\/td>285W<\/td><\/tr>
Motherboard<\/td>ASUS<\/td>Pro WS TRX50-SAGE WIFI<\/td>2024\/11<\/td>TRX50 chipset for AMD<\/td>6W<\/td><\/tr>
Power supply<\/td>SilverStone<\/td>HELA 2050R Platinum 2050W
(SST-HA2050R-PM)<\/td>		2025\/01<\/td>2050W 80PLUS PLATINUM<\/td><\/td><\/tr>
NVMe<\/td>Hynye<\/td>HE70 PCIe NVMe M.2 2280
(\u200eHE70-4TBNHS1)<\/td>		2024\/02<\/td>4TB NVMe (7450MB\/s)<\/td>25W<\/td><\/tr><\/tbody>
<\/td><\/td><\/td><\/td>Total<\/td>1359 W<\/td><\/tr><\/tfoot><\/table>
Nanopore\u306eadaptive sampling\u304c\u53ef\u80fd\u306a\u30ea\u30a2\u30eb\u30bf\u30a4\u30e0\u30d9\u30fc\u30b9\u30b3\u30fc\u30eb\u30b5\u30fc\u30d0\u30fc\u3068\u3057\u3066\u4f5c\u6210\u3002\u96fb\u6e90\u304c\u809d\uff082050W\uff09\u3002200V\u306e\u5c02\u7528\u96fb\u6e90\u306b\u63a5\u7d9a\u3002<\/figcaption><\/figure>\n\n\n\n

<\/p>\n","protected":false},"excerpt":{"rendered":"

Alphafold\u7528\u8a08\u7b97\u6a5f Parts <\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"colormag_page_container_layout":"default_layout","colormag_page_sidebar_layout":"default_layout","_locale":"ja","_original_post":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/?p=2284","footnotes":""},"categories":[24],"tags":[],"class_list":["post-2284","post","type-post","status-publish","format-standard","hentry","category-miscellaneous","ja"],"_links":{"self":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts\/2284","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=2284"}],"version-history":[{"count":27,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts\/2284\/revisions"}],"predecessor-version":[{"id":3088,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts\/2284\/revisions\/3088"}],"wp:attachment":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=2284"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=2284"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=2284"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}