{"id":924,"date":"2019-07-21T22:29:08","date_gmt":"2019-07-21T13:29:08","guid":{"rendered":"http:\/\/home.hiroshima-u.ac.jp\/~tigawa\/?p=924"},"modified":"2019-10-17T22:17:18","modified_gmt":"2019-10-17T13:17:18","slug":"gffread%e3%81%ae%e4%bd%bf%e3%81%84%e6%96%b9","status":"publish","type":"post","link":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/?p=924","title":{"rendered":"[bioinfo]gffread\u306e\u4f7f\u3044\u65b9"},"content":{"rendered":"\n<p>gff3\u304b\u3089gtf\u3078\u5909\u63db\u3002<\/p>\n\n\n\n<pre class=\"wp-block-preformatted\">gffread -E my.gff3 -g my_genome.fasta -T -o my.gtf<\/pre>\n\n\n\n<hr class=\"wp-block-separator\"\/>\n\n\n\n<p>gtf\u304b\u3089gff3\u3078\u5909\u63db\u3002<\/p>\n\n\n\n<pre class=\"wp-block-preformatted\">gffread -E my.gtf -g my_genome.fasta -o my.gff3<\/pre>\n\n\n\n<hr class=\"wp-block-separator\"\/>\n\n\n\n<p>gff\u3092\u5229\u7528\u3057\u3066protein\u3001exon\u3001CDS\u306e\u914d\u5217\u3092\u62bd\u51fa\u3002<\/p>\n\n\n\n<pre class=\"wp-block-preformatted\">gffread -E my.gff3 -g my_genome.fasta -w my_exons.fasta -x my_cds.fasta -y my_protein.fasta<\/pre>\n","protected":false},"excerpt":{"rendered":"<p>gff3\u304b\u3089gtf\u3078\u5909\u63db\u3002 gffrea<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"colormag_page_container_layout":"default_layout","colormag_page_sidebar_layout":"default_layout","_locale":"ja","_original_post":"924","footnotes":""},"categories":[7],"tags":[],"class_list":["post-924","post","type-post","status-publish","format-standard","hentry","category-protocol","ja"],"_links":{"self":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts\/924","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=924"}],"version-history":[{"count":6,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts\/924\/revisions"}],"predecessor-version":[{"id":1076,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts\/924\/revisions\/1076"}],"wp:attachment":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=924"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=924"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=924"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}