{"id":998,"date":"2019-09-06T20:58:05","date_gmt":"2019-09-06T11:58:05","guid":{"rendered":"http:\/\/home.hiroshima-u.ac.jp\/~tigawa\/?p=998"},"modified":"2019-10-17T22:17:04","modified_gmt":"2019-10-17T13:17:04","slug":"bioinfo%e7%b8%ae%e9%87%8d%e5%a1%a9%e5%9f%ba%e3%82%b3%e3%83%bc%e3%83%89%e3%82%92%e5%90%ab%e3%82%80%e3%82%a2%e3%83%a9%e3%82%a4%e3%83%a1%e3%83%b3%e3%83%88%e3%81%aeomega-valuedn-ds%e3%82%92%e7%ae%97","status":"publish","type":"post","link":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/?p=998","title":{"rendered":"[bioinfo]\u7e2e\u91cd\u5869\u57fa\u30b3\u30fc\u30c9\u3092\u542b\u3080\u30a2\u30e9\u30a4\u30e1\u30f3\u30c8\u306eomega value(dN\/dS)\u3092\u7b97\u51fa\u3059\u308b\u3002"},"content":{"rendered":"<p>CDS\u3092\u30b2\u30ce\u30e0\u304b\u3089\u62bd\u51fa\u3057\u3001\u907a\u4f1d\u5b50\u3054\u3068\u306emultiple FASTA\u30d5\u30a1\u30a4\u30eb\u3092\u4f5c\u6210\u3059\u308b\u3002\u810a\u690e\u52d5\u7269\u3067\u3042\u308c\u3070\u6570\u4e07\u30d5\u30a1\u30a4\u30eb\u306b\u306a\u308b\u304c\u3001\u3053\u308c\u3092\u4e00\u3064\u306e\u30d5\u30a1\u30a4\u30eb\u306b\u5165\u308c\u3001<a href=\"https:\/\/github.com\/chasewnelson\/snpgenie\">SNPGenie<\/a> (Nelson et al., 2015)\u306e<span class=\"css-truncate css-truncate-target\">snpgenie_within_group.pl\u3092\u4f7f\u3063\u3066\u8a08\u7b97\u3055\u305b\u308b\u3002<br \/>\nSNPGenie\u306f\u591a\u578b\u72b6\u614b\u306e\u5869\u57fa\u90e8\u5206\u3082\u7d44\u307f\u5408\u308f\u305b\u3054\u3068\u306b\u8a08\u7b97\u3059\u308b\u306e\u3067\u3001\u7d50\u69cb\u6642\u9593\u304c\u304b\u304b\u308b\u3002\u6570\u4e07\u30d5\u30a1\u30a4\u30eb\u3042\u308b\u3068\u30ef\u30fc\u30af\u30b9\u30c6\u30fc\u30b7\u30e7\u30f3\u3092\u4f7f\u3063\u3066\u3082\u8a08\u7b97\u306b\u7d04\u4e00\u65e5\u5fc5\u8981\u3068\u3059\u308b\u3002<br \/>\n<\/span><\/p>\n<pre class=\"\">for fasta in $(find . -name \"*.fasta\"); do perl snpgenie_within_group.pl --fasta_file_name=${fasta} --gtf_file ..\/test.gtf --num_bootstrap=0 --procs_per_node=56; done;<\/pre>\n","protected":false},"excerpt":{"rendered":"<p>CDS\u3092\u30b2\u30ce\u30e0\u304b\u3089\u62bd\u51fa\u3057\u3001\u907a\u4f1d\u5b50\u3054\u3068\u306em<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"colormag_page_container_layout":"default_layout","colormag_page_sidebar_layout":"default_layout","_locale":"ja","_original_post":"998","footnotes":""},"categories":[7],"tags":[],"class_list":["post-998","post","type-post","status-publish","format-standard","hentry","category-protocol","ja"],"_links":{"self":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts\/998","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=998"}],"version-history":[{"count":3,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts\/998\/revisions"}],"predecessor-version":[{"id":1074,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=\/wp\/v2\/posts\/998\/revisions\/1074"}],"wp:attachment":[{"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=998"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=998"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/home.hiroshima-u.ac.jp\/~tigawa\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=998"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}