Research Articles
2024
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- Fujikake Y., Fukuda K., Iwatani Y., Matsushita K., Fujimoto K., Nishino A. S.
- "Pulsation waves along the Ciona heart tube reverse by bimodal rhythms expressed by a remote pair of pacemakers"
- J. Exp. Biol. (2024) jeb.246810.
- Nakatani T., Utsumi Y., Fujimoto K., Iwamura M., Kise K.
- "Image recognition-based petal arrangement estimation"
- Frontiers Plant Sci. (2024)
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2023
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- Fujiwara M., Imamura M., Matsushita K., Roszak P., Yamashino T., Hosokawa Y., Nakajima K., Fujimoto K., Miyashima S.
- "Patterned proliferation orients tissue-wide stress to control root vascular symmetry in Arabidopsis"
- Curr. Biol. (2023)
- プレスリリース 阪大ReSOU.
- Ikejiri Y., Tanimoto Y., Fujita K., Hiramatsu F., Yamazaki S. J., Endo Y., Iwatani Y., Fujimoto K., Kimura K. D.
- "Neural mechanism of experience-dependent sensory gain control in C. elegans"
- Neuroscience Research (2023)
- プレスリリース 阪大ReSOU.
- Ishikawa M., Fujiwara A., Kosetsu K., Horiuchi Y., Kamamoto N., Umakawa N., Tamada Y., Zhang L., Matsushita K., Palfalvi G., Nishiyama T., Kitasaki S., Masuda Y., Shiroza Y., Kitagawa N., Nakamura T., Cui H., Hiwatashi Y., Kabeya Y., Shigenobu S., Aoyama T., Kato K., Murata T., Fujimoto K., Benfey P. N., Hasebe M., Kofuji R.
- "GRAS transcription factors regulate cell division planes in moss overriding the default rule"
- Proceedings of the National Academy of Sciences USA(2023)
- プレスリリース 阪大ReSOU.
2022
- Matsushita K., Hashimura H., Kuwayama H., Fujimoto K.
- "Collective Cell Movement under Cell-Scale Tension Gradient at Tissue Interface"
- J. Phys. Soc. Jpn. 91, 054802(2022)
- Goh T., Fujiwara M., Tsugawa S., Fujimoto K.
- "器官の形に種を超えた共通性をもたらす物理"
- 生物物理62巻1号 p.7-12 (2022)
- Sudo M., Fujimoto K.
- "Traveling wave of inflammatory response to regulate the expansion or shrinkage of skin erythema"
- PLOS ONE (2022)
- プレスリリース 阪大ReSOU.
2021
- Matsushita K., Kamamoto N., Sudo M., Fujimoto K.
- "Interface Effect on Persistence of Cellular Mutually Guiding"
- Proc. Sympo. Simul. Traffic Flow Self-Driven Part. (2021)
- Sarper S.E., Hirai T., Matsuyama T., Kuratani S., Fujimoto K.
- "Polymorphism in the symmetries of gastric pouch arrangements in the sea anemone D. lineata."
- Zoological Lett. (2021) DOI: 10.1186/s40851-021-00180-0
- プレスリリース 阪大ReSOU.
- プレスリリース 理化学研究所.
- Matsushita K., Yabunaka S. Fujimoto K.
- "Polarity Fluctuation Inhibition by Memory in Collective Cell Motion"
- J. Phys. Soc. Jpn.(2021) DOI: 10.7566/JPSJ.90.054801
- Kamamoto N. , Taishi T., Fujimoto K., Shimamura M.
- "Rotation angle of stem cell division plane controls spiral phyllotaxis in mosses."
- J. Plant. Res.(2021) DOI: 10.1007/s10265-021-01298-0
- Fujiwara M., Goh T., Tsugawa S., Nakajima K, Fukaki H.,Fujimoto K.
- "Tissue growth constrains root organ outlines into an isometrically scalable shape."
- Development(2021) DOI:10.1242/dev.196253
- プレスリリース 阪大ReSOU.
2020
- Katsuyoshi M. , Yabunaka S., Hashimura H., Fujimoto K.
- "Leader-guiding collective cell rotation"
- Proceedings of the Symposium on Simulation of Traffic Flow and Self-driven Particles(2020)
- Katsuyoshi M.
- "Adhesion-stabilizing long-distance transport of cells on tissue surface"
- Phys. Rev. E.(2020) DOI:10.1103/PhysRevE.101.052410
- Okuda S., Fujimoto K.
- "A Mechanical Instability in Planar Epithelial Monolayers Leads to Cell Extrusion."
- Biophys. J. (2020)
- Kitazawa M. S., Fujimoto K.
- "Perianth Phyllotaxis Is polymorphic in the basal eudicot Anemone and Eranthis species."
- Frontiers in Ecology Evolution (2020) doi.org/10.3389/fevo.2020.00070 朝日新聞.
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2019
- Matsushita K., Horibe K., Kamamoto N., Yabunaka S.,Fujimoto K.
- "Crowding-Boosting Polarity and Motion Order of Cells"
- Proceedings of the Symposium on Simulation of Traffic Flow (2019) 25, 21--24
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- Matsushita K., Horibe K., Kamamoto N., Fujimoto K.
- "Cell Motion Alignment as a Polarity Memory Effect."
- J. Phys. Soc. Jpn. (2019) 88(10): 103801. DOI: 10.7566/JPSJ.88.103801
- Horibe K., Hironaka K., Matsushita K., Fujimoto K.
- "Curved surface geometry-induced topological change of an excitable planar wavefront."
- Chaos (2019) 29: 093120.
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2018
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- Matsushita K., Horibe K., Kamamoto N. and Fujimoto K.
- "Cell Migration driven by Receptor Density Polarity of Cell-Matrix Adhesion."
- Proceedings of the Symposium on Simulation of Traffic Flow (2018) 24: 5-8
- Matsushita K.
- "Emergence of collective propulsion through cell-cell adhesion."
- Physical Review E (2018) 97(4): 042413(5)
- Kitazawa M. S., Fujimoto K.
- "Spiral phyllotaxis underlies constrained variation in Anemone (Ranunculaceae) tepal arrangement."
- J. Plant Res. (2018) 131(3):459-468
- Nakamura K., Hisanaga T., Fujimoto K., Nakajima K., Wada H.
- "Plant-inspired pipettes"
- J. Roy. Soc. Interface (2018) 15:20170868.
- Please visit also Science News.
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2017
- Katsuyoshi Matsushita
- "Elementary movement step of adhesive-interaction driving cells"
- Proceedings of symposium on simulations of traffic flow 23, (2017), 37-40
- Daisuke Mashiko, Masahito Ikawa, Koichi Fujimoto
- "Mouse spermatozoa with higher fertilization rates have thinner nuclei"
- PeerJ. (2017) 5:e3913.
- Alice Tsuboi#, Daiki Umetsu#*, Erina Kuranaga, Koichi Fujimoto* (#Equal contribution, *Correspondence)
- "Inference of cell mechanics in heterogeneous epithelial tissue based on multivariate clone shape quantification"
- Frontiers in Cell and Developmental Biology. (2017) 5:68.
- Yoshihiro Morishita, Ken-ichi Hironaka, Sang-Woo Lee, Takashi Jin, Daisuke Ohtsuka
- "Reconstructing 3D deformation dynamics for curved epithelial sheet morphogenesis from positional data of sparsely-labeled cells"
- Nature Communications (2017) 8: 15.
- Katsuyoshi Matsushita
- "Cell-alignment patterns in the collective migration of cells with polarized adhesion"
- Physical Review E (2017) 95: 032415.
- Ken-ichi Hironaka, Yoshihiro Morishita
- "Adaptive significance of critical weight for metamorphosis in holometabolous insects"
- Journal of Theoretical Biology (2017) 417: 68-83.
2016
- Kitazawa M. S., Fujimoto K.
- "Stochastic occurrence of trimery from pentamery in floral phyllotaxis of Anemone (Ranunculaceae)"
- Acta Soc. Bot. Poloniae (2016) 85(4): 3530.
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- Sato, Y., Shimaoka,D., Fujimoto, K., Taga G.
- "Neural field dynamics for growing brains"
- Nonlinear Theory and Its Applications (2016) 7(2): 226-233.
- Haruhiko Miyata, Julio M Castaneda, Yoshitaka Fujihara, Zhifeng Yu, Denise R Archambeault, Ayako Isotani, Daiji Kiyozumi, Maya L Kriseman, Daisuke Mashiko, Takafumi Matsumura, Ryan M Matzuk, Masashi Mori, Taichi Noda, Asami Oji, Masaru Okabe, Renata Prunskaite-Hyyrylainen, Ramiro Ramirez-Solis, Yuhkoh Satouh, Qian Zhang, Masahito Ikawa, Martin M Matzuk
- "Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice"
- Proceedings of the National Academy of Sciences (2016) 113(28): 7704-7710.
- Katsuyoshi Matsushita.
- "Model Prediction of Cell-Shape Dependence of Cell Motion"
- Proceedings of the Symposium on Simulation of Traffic Flow (2016) 22: 5-8.
2015
- Kitazawa M. S., Fujimoto K.
- "A Dynamical Phyllotaxis Model to Determine Floral Organ Number"
- PLoS Compulational Biology (2015) 11(5): e1004145.
- Haruhiko Miyata, Yuhkoh Satouh, Daisuke Mashiko, Masanaga Muto, Kaori Nozawa, Kogiku Shiba, Yoshitaka Fujihara, Ayako Isotani, Kazuo Inaba, Masahito Ikawa.
- "Sperm calcineurin inhibition prevents mouse fertility with implications for male contraceptive"
- Science (2015) 350(6259): 442-445.
- Katsuyoshi Matsushita.
- "Collective Migration of Repulsively Interacting Cells"
- Proceedings of the Symposium on Simulation of Traffic Flow (2015) 21: 19-22.
2014
- Kitazawa M. S., Fujimoto K.
- "A Developmental basis for stochasticity in floral organ numbers"
- Frontiers in Plant Science (2014) 5, 545
2013
- Fujimoto K., Sawai S.
- “A Design Principle of Group-level Decision Making in Cell Populations”
- PLoS Computational Biology (2013) 9(6), e1003110.
- Masaki N.*, Fujimoto K.*, Honda-Kitahara M, Hada M., Sawai S. (*Equal contribution)
- “Robustness of Self-Organizing Chemoattractant Field Arising from Precise Pulse Induction of Its Breakdown Enzyme: A Single-Cell Level Analysis of PDE Expression in Dictyostelium”
- Biophys. J. (2013) 104, 1191 - 1202.
2011
- Ode K. L., Fujimoto K, Kubota Y., and Takisawa H.
- “Inter-origin cooperativity of geminin action establishes an all-or-none switch for replication origin licensing”
- Genes Cells (2011) 16, 380 - 396.
2010
- Gregor T., Fujimoto K, Masaki N. and Sawai S.
- “The Onset of Collective Behavior in Social Amoebae”
- Science (2010) 328, 1021-1025.
2008
- Fujimoto K., Ishihara S. and Kaneko K.
- “Network evolution of body plans.”
- PLoS ONE. (2008) e2772.
～2007
- Tachikawa M. and Fujimoto K.
- “Emergence of multi-time scales in coupled oscillators with plastic frequencies.”
- Europhysics Letters (2007) 78, 20004.
- Matsuo M., Fujimoto K. and Shibata T.
- “Relation between Adaptation and Irrversible Circulation in Bacteria Chemotaxis.”
- Progress of Theoretical Physics Suppl. (2006) 161, 251-254.
- Ishihara S., Fujimoto K. and Shibata T.
- “Cross talking of network motifs in gene regulation that generates temporal pulses and spatial stripes.”
- Genes Cells (2005) 10, 1025-38
- Shibata T. and Koichi Fujimoto K.
- “Noisy signal amplification in ultrasensitive signal transduction.”
- Proc. Natl. Acad. Sci. USA. (2005) 102, 331-6.
- Fujimoto K. and Kaneko K.
- “Convective instability with time scale translation of the transmitted fluctuation.”
- Physica D (2004) 196, 67-89.
- Fujimoto K. and Kaneko K.
- “How fast elements can affect slow dynamics.”
- Physica D (2003) 180, 1-16.
- Fujimoto K. and Kaneko K.
- “Bifurcation cascade as chaotic itinerancy with multiple time scales.”
- Chaos (2003) 13, 1041-1056.
- Fujimoto K. and Kaneko K.
- “Sensitive boundary condition dependence of noise-sustained structure.”
- Physical Review E (2001) 63, 0362180-1-5.
- Fujimoto K. and Kaneko K.
- “Noise-induced input dependence in a convectively unstable dynamical System.”
- Physica D (1999) 129, 203-222.
Reviews
2019
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- 坪井有寿、藤本 仰一
- “前がん細胞が正常細胞の領地へ拡大して占拠するしくみ - 予測と検証.”
- 実験医学 (2018) １２月号 3282-3285.
- 藤本 仰一
- “生命の物理：相互干渉する多スケール系の共通性と多様性.”
- 日本物理学会誌 特集「物理学７０の不思議」 (2017) ３月号.
- 北沢 美帆, 藤本 仰一
- “花びらが7枚の花はなぜ少ないか”
- パリティ (2016)12月号 31(12): 4-10.
- 坪井 有寿, 藤本 仰一
- “アポトーシスにより空いた隙間をめぐる力学的な細胞競合──数理モデルからの予測”
- 医学のあゆみ 特集 "細胞競合の基本原理とその破綻" (2016) 257(4): 311-316.
- 坪井 有寿, 藤本 仰一
- “機械的な力を介した細胞競合の数理モデル”
- 生体の科学 特集 "細胞の社会学″ﾗ胞間で繰り広げられる協調と競争" (2016) 67(2): 159-162.
- Fujimoto K., Sawai S.
- “Collective Decision making and oscillatory behaviors in cell populations”
- Engineering Chemical Complexity. (World Scientific Pub. Singapore. Edited by Mikhailov & Ertl) (2012) 279-298.
- Kamino K., Fujimoto K., Sawai S.
- “The collective oscillations in developing cells: Insights from simple systems”
- Dev. Growth Dif. (2011) 53, 503 - 517.
- 藤本 仰一, 石原 秀至, 金子 邦彦
- “空間パタン形成の遺伝子ネットワーク進化理論 ― ネットワーク構造と機能の対応づけ.”
- 生物物理 (2010) 50, 18-22.
- 藤本 仰一
- “体節形成パターンを数理モデルで解く.”
- 生命誌ジャーナル (2009) 夏号
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